Assessment of microbial community diversity in lakes of İğneada floodplain forest by metabarcoding approach

Emine Gözde Özbayram; İbrahim Halil Miraloğlu; Bahar İnce

doi:10.3153/AR21025

EN

Assessment of microbial community diversity in lakes of İğneada floodplain forest by metabarcoding approach

Abstract

This paper aims to contribute to the understanding of bacterial community patterns of the lakes of İğneada Floodplain Forest by metabarcoding approach. Within this scope, surface water samples were collected from three lakes located in the area namely Mert Lake, Hamam Lake, and Saka Lake, and the bacterial diversity was assessed by a high throughput sequencing of the 16S rRNA gene. Chao1 richness and Shannon diversity were higher in Saka Lake indicated a more diverse bacterial community. Proteobacteria was by far the most abundant phyla in all lakes. Although Bacteroidetes and Actinobacteria also dominated the community, their abundances differed in each lake. While the family Burkholderiaceae represented 25% of the bacterial community in Saka Lake, the abundances were 9% and 4% in Hamam Lake and Mert Lake, respectively. This study is one of the first investigations specifically focused on the bacterial communities in three lakes of İğneada Floodplain by next-generation sequencing platform and gave a prescreening of the bacterial diversity. Further studies are required to determine the biotechnological potential of this unique habitat.

Keywords

Supporting Institution

This study was supported by Boğaziçi University Research Fund

Project Number

19Y00D9

Thanks

The authors acknowledge MSc. Aslınur Çalışıyor for her kind help during sampling.

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URL 1. http://igneada.tabiat.gov.tr/ accessed 27/02/2021

Details

Primary Language

English

Subjects

Hydrobiology

Journal Section

Research Article

Authors

Emine Gözde Özbayram ^*
0000-0002-5416-0611
Türkiye

İbrahim Halil Miraloğlu
0000-0001-5291-8380
Türkiye

Bahar İnce
0000-0001-6205-2074
Türkiye

Publication Date

October 1, 2021

Submission Date

February 28, 2021

Acceptance Date

March 16, 2021

Published in Issue

Year 2021 Volume: 4 Number: 4

DOI

https://doi.org/10.3153/AR21025

IZ

https://izlik.org/JA28DG32TR

Cite

RIS / Bibtex

APA

Özbayram, E. G., Miraloğlu, İ. H., & İnce, B. (2021). Assessment of microbial community diversity in lakes of İğneada floodplain forest by metabarcoding approach. Aquatic Research, 4(4), 304-312. https://doi.org/10.3153/AR21025