Research Article
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Year 2023, , 19 - 25, 01.01.2023

Arif Parmaksız

https://doi.org/10.3153/AR23003

Abstract

References

  • Abdoli, A. (2000). The inland water fishes of Iran. Iranian Museum of Nature and Wildlife, Tehran 10-40.
  • Bayhan, Y. K. (2021). The fish fauna of the Atatürk Dam Lake (Adıyaman/Turkey). Natural and Engineering Sciences, 6(3), 237-255. https://doi.org/10.28978/nesciences.1036854
  • Borkenhagen, K. (2014). A new genus and species of cyprinid fish (Actinopterygii, Cyprinidae) from the Arabian Peninsula, and its phylogenetic and zoogeographic affinities. Environmental Biology of Fishes, 97(10), 1179-1195. https://doi.org/10.1007/s10641-014-0315-y
  • Briolay, J., Nicols Galtier, N., Brito, R. M., Bouvet, Y. (1998). Molecular phylogeny of cyprinidae inferred from cytochrome b DNA sequences. Molecular Phylogenetics and Evolution, 9(1), 100-108. https://doi.org/10.1006/mpev.1997.0441
  • Dogu, Z., Aral, F. Sahinoz, E. (2014). The determination of some spermatological and hematological parameters of shabbout (Barbus grypus) in Atatürk Dam Lake, Şanlıurfa. Journal of FisheriesSciences.com, 8(4), 265- 277. https://doi.org/10.3153/jfscom.201432
  • Durand, J. D., Tsigenopoulos, C. S., Ünlü, E., Berrebi, P. (2002). Phylogeny and biogeography of the family Cyprinidae in the Middle East inferred from cytochrome b DNA-evolutionary significance of this region. Molecular Phylogenetics and Evolution, 22(1), 91-100. https://doi.org/10.1006/mpev.2001.1040
  • Frankham, R., Briscoe, D.A., Ballou, J.D. (2002). Introduction to conservation genetics. Cambridge University Press. https://doi.org/10.1017/CBO9780511808999
  • Göçer, M. (2022). Extraction and characterization of collagen from the skin and bone of shabout (Arabibarbus grypus Heckel, 1843). Iranian Journal of Fisheries Sciences, 21(3), 671-687.
  • Gökçınar, N.C. (2010). Effect of partially replacing fishmeal with azolla (Azolla sp.) on growht parametres of shabbout fish (Tor grypus H. 1843). MSc thesis, Ankara University, Turkey, 51.
  • Iguchi, K., Tanimura, Y., Nishida, M. (1997). Sequence divergence in the mtDNA control region of amphidromous and landlocked forms of ayu. Fisheries Science, 63, 901-905. https://doi.org/10.2331/fishsci.63.901
  • Inoue, J. G., Miya, M., Tsukamoto, K., Nishida, M. (2000). Complete mitochondrial DNA sequence of the Japanese sardine, Sardinops melanostictus. Fisheries Science, 66, 924-932. https://doi.org/10.1046/j.1444-2906.2000.00148.x
  • Khodadadi, M., Arab, A., Jaferian, A. (2016). A Preliminary Study on Sperm Morphology, Motility and Composition of Seminal Plasma of Shirbot, Barbus grypus. Turkish Journal of Fisheries and Aquatic Sciences, 16, 947-951. https://doi.org/10.4194/1303-2712-v16_4_22
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547-1549. https://doi.org/10.1093/molbev/msy096
  • Liu, G., Zhou, L. (2016). Population genetic structure and molecular diversity of the red swamp crayfish in China based on mtDNA COI gene sequences, Mitochondrial DNA Part A, 28(6), 860-866. https://doi.org/10.1080/24701394.2016.1199022
  • Moradkhani, A., Abdi, R., Abadi, M.S.A., Nabavi, S.M., Basir, Z. (2020). Quantification and description of gut-associated lymphoid tissue in, shabbout, Arabibarbus grypus (actinopterygii: cypriniformes: cyprinidae), in warm and cold season. Acta Ichthyologica et Piscatoria, 50(4), 423-432. https://doi.org/10.3750/AIEP/02910
  • Nikpey, M. (1996). The biology of Barbus sharpeyi and Barbus grypus in Khuzestan Province. The Scientific Research Results of the Iranian fisheries Org., First program, Tehran, Iran, pp. 83.
  • Olgunoglu, I.A., Olgunoglu, M.P., Artar, E. (2011). Seasonal changes in biochemical composition and meat yield of Shabut (Barbus grypus, Heckel 1843). Iranian Journal of Fisheries Sciences, 10(1), 181-187.
  • Oymak, S.A., Dogan, N., Uysal, E. (2008). Age, growth and reproduction of the Shabut Tor grypus (Cyprinidae) in Ataturk Dam Lake (Euphrates River), Turkey. Cybium, 32(2), 145-152.
  • Oymak, S. A., Karadede, H., Dogan, N. (2009). Heavy metal in tissues of Tor grypus from Ataturk Dam Lake, Euphrates River-Turkey. Biologia, 64(1), 151-155. https://doi.org/10.2478/s11756-009-0026-6
  • Parmaksiz, A., Seker, O., Aslan, N., Oymak, A. (2017). Determination of genetic diversity in Barbus grypus Heckel, 1843 Populations by mtDNA COI gene sequences. Yunus Araştırma Bülteni, 1, 103-107.
  • Oymak, S.A., Parmaksız, A. (2018). Genetic analysis based on mitochondrial DNA D loop sequences of Arabibarbus grypus (Heckel, 1843) populations. International Marine Freshwater Sciences Symposium, 116-119.
  • Parmaksız, A. (2020). Population genetic diversity of Yellow Barbell (Carasobarbus luteus) from Kueik, Euphrates and Tigris Rivers based on mitochondrial DNA D-loop sequences. Turkish Journal of Fisheries and Aquatic Sciences, 20(1), 79-86. https://doi.org/10.4194/1303-2712-v20_1_08
  • Parmaksız, A. (2021). Determination of genetic variations by using mitochondrial DNA cyt b sequences in populations of Carasobarbus luteus (Cyprinidae). Aquatic Research, 4(4), 313-320. https://doi.org/10.3153/AR21026 Parmaksız, A., Korkmaz, E., Ulusal, D., Doğan, N. (2022). Phylogenetic analysis of Luciobarbus Heckel, 1843 and Barbus Cuvier Cloquet, 1816 species in the Euphrates River (Turkey) based on mtDNA COI gene sequences. Aquatic Research, 5(2), 129-134. https://doi.org/10.3153/AR22012
  • Parmaksız, A., Şeker, Ö. (2018). Genetic diversity of the endemic species shabbout (Arabibarbus grypus (Heckel, 1843)) based on partial cytochrome b sequences of mitochondrial DNA. Aquatic Research, 1(3), 103-109. https://doi.org/10.3153/AR18011
  • Spielman, D., Brook, B.W., Frankham, R. (2004). Most species are not driven to extinction before genetic factors impact them. Proceedings of the National Academy of Sciences, 101, 15261e15264. https://doi.org/10.1073/pnas.0403809101

Mitochondrial DNA sequence analysis of Arabibarbus grypus (Heckel, 1843) living in Great Zab (Erbil, Iraq)

Year 2023, , 19 - 25, 01.01.2023

Arif Parmaksız

https://doi.org/10.3153/AR23003

Abstract

Arabibarbus grypus (Heckel, 1843), which naturally lives in the Euphrates and Tigris River systems and is endemic, is an economically important fish species consumed by humans. Since the population of this species, which is hunted by both fishermen and local people, is decreasing day by day, its genetic characteristics need to be determined. This study aims to determine the genetic characteristics of A. grypus samples living in Great Zab based on sequence analysis of mtDNA cyt b and mtDNA d loop gene regions. Total DNA isolation was performed from muscle tissue using the kit. Then, Polymerase Chain Reaction was applied through specific primers to mtDNA cyt b and mtDNA d loop gene regions, and the target regions were amplified. The products with the target length were sent to the commercial firm and sequence analysis was performed. Regarding these specimens living in Great Zab, two haplotypes were determined for the mtDNA cyt b gene region and five haplotypes for the mtDNA d loop gene region. These haplotypes were compared with the haplotypes in the gene bank and the results were evaluated. Some important data has been obtained regarding the conservation and management of this fish species. Since three new haplotypes were detected for the d loop region in this studied locality, it is important to include the samples in this locality in conservation studies.

Keywords

Zap Water Arabibarbus grypus mtDNA Euphrates River Tigris River

References

  • Abdoli, A. (2000). The inland water fishes of Iran. Iranian Museum of Nature and Wildlife, Tehran 10-40.
  • Bayhan, Y. K. (2021). The fish fauna of the Atatürk Dam Lake (Adıyaman/Turkey). Natural and Engineering Sciences, 6(3), 237-255. https://doi.org/10.28978/nesciences.1036854
  • Borkenhagen, K. (2014). A new genus and species of cyprinid fish (Actinopterygii, Cyprinidae) from the Arabian Peninsula, and its phylogenetic and zoogeographic affinities. Environmental Biology of Fishes, 97(10), 1179-1195. https://doi.org/10.1007/s10641-014-0315-y
  • Briolay, J., Nicols Galtier, N., Brito, R. M., Bouvet, Y. (1998). Molecular phylogeny of cyprinidae inferred from cytochrome b DNA sequences. Molecular Phylogenetics and Evolution, 9(1), 100-108. https://doi.org/10.1006/mpev.1997.0441
  • Dogu, Z., Aral, F. Sahinoz, E. (2014). The determination of some spermatological and hematological parameters of shabbout (Barbus grypus) in Atatürk Dam Lake, Şanlıurfa. Journal of FisheriesSciences.com, 8(4), 265- 277. https://doi.org/10.3153/jfscom.201432
  • Durand, J. D., Tsigenopoulos, C. S., Ünlü, E., Berrebi, P. (2002). Phylogeny and biogeography of the family Cyprinidae in the Middle East inferred from cytochrome b DNA-evolutionary significance of this region. Molecular Phylogenetics and Evolution, 22(1), 91-100. https://doi.org/10.1006/mpev.2001.1040
  • Frankham, R., Briscoe, D.A., Ballou, J.D. (2002). Introduction to conservation genetics. Cambridge University Press. https://doi.org/10.1017/CBO9780511808999
  • Göçer, M. (2022). Extraction and characterization of collagen from the skin and bone of shabout (Arabibarbus grypus Heckel, 1843). Iranian Journal of Fisheries Sciences, 21(3), 671-687.
  • Gökçınar, N.C. (2010). Effect of partially replacing fishmeal with azolla (Azolla sp.) on growht parametres of shabbout fish (Tor grypus H. 1843). MSc thesis, Ankara University, Turkey, 51.
  • Iguchi, K., Tanimura, Y., Nishida, M. (1997). Sequence divergence in the mtDNA control region of amphidromous and landlocked forms of ayu. Fisheries Science, 63, 901-905. https://doi.org/10.2331/fishsci.63.901
  • Inoue, J. G., Miya, M., Tsukamoto, K., Nishida, M. (2000). Complete mitochondrial DNA sequence of the Japanese sardine, Sardinops melanostictus. Fisheries Science, 66, 924-932. https://doi.org/10.1046/j.1444-2906.2000.00148.x
  • Khodadadi, M., Arab, A., Jaferian, A. (2016). A Preliminary Study on Sperm Morphology, Motility and Composition of Seminal Plasma of Shirbot, Barbus grypus. Turkish Journal of Fisheries and Aquatic Sciences, 16, 947-951. https://doi.org/10.4194/1303-2712-v16_4_22
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547-1549. https://doi.org/10.1093/molbev/msy096
  • Liu, G., Zhou, L. (2016). Population genetic structure and molecular diversity of the red swamp crayfish in China based on mtDNA COI gene sequences, Mitochondrial DNA Part A, 28(6), 860-866. https://doi.org/10.1080/24701394.2016.1199022
  • Moradkhani, A., Abdi, R., Abadi, M.S.A., Nabavi, S.M., Basir, Z. (2020). Quantification and description of gut-associated lymphoid tissue in, shabbout, Arabibarbus grypus (actinopterygii: cypriniformes: cyprinidae), in warm and cold season. Acta Ichthyologica et Piscatoria, 50(4), 423-432. https://doi.org/10.3750/AIEP/02910
  • Nikpey, M. (1996). The biology of Barbus sharpeyi and Barbus grypus in Khuzestan Province. The Scientific Research Results of the Iranian fisheries Org., First program, Tehran, Iran, pp. 83.
  • Olgunoglu, I.A., Olgunoglu, M.P., Artar, E. (2011). Seasonal changes in biochemical composition and meat yield of Shabut (Barbus grypus, Heckel 1843). Iranian Journal of Fisheries Sciences, 10(1), 181-187.
  • Oymak, S.A., Dogan, N., Uysal, E. (2008). Age, growth and reproduction of the Shabut Tor grypus (Cyprinidae) in Ataturk Dam Lake (Euphrates River), Turkey. Cybium, 32(2), 145-152.
  • Oymak, S. A., Karadede, H., Dogan, N. (2009). Heavy metal in tissues of Tor grypus from Ataturk Dam Lake, Euphrates River-Turkey. Biologia, 64(1), 151-155. https://doi.org/10.2478/s11756-009-0026-6
  • Parmaksiz, A., Seker, O., Aslan, N., Oymak, A. (2017). Determination of genetic diversity in Barbus grypus Heckel, 1843 Populations by mtDNA COI gene sequences. Yunus Araştırma Bülteni, 1, 103-107.
  • Oymak, S.A., Parmaksız, A. (2018). Genetic analysis based on mitochondrial DNA D loop sequences of Arabibarbus grypus (Heckel, 1843) populations. International Marine Freshwater Sciences Symposium, 116-119.
  • Parmaksız, A. (2020). Population genetic diversity of Yellow Barbell (Carasobarbus luteus) from Kueik, Euphrates and Tigris Rivers based on mitochondrial DNA D-loop sequences. Turkish Journal of Fisheries and Aquatic Sciences, 20(1), 79-86. https://doi.org/10.4194/1303-2712-v20_1_08
  • Parmaksız, A. (2021). Determination of genetic variations by using mitochondrial DNA cyt b sequences in populations of Carasobarbus luteus (Cyprinidae). Aquatic Research, 4(4), 313-320. https://doi.org/10.3153/AR21026 Parmaksız, A., Korkmaz, E., Ulusal, D., Doğan, N. (2022). Phylogenetic analysis of Luciobarbus Heckel, 1843 and Barbus Cuvier Cloquet, 1816 species in the Euphrates River (Turkey) based on mtDNA COI gene sequences. Aquatic Research, 5(2), 129-134. https://doi.org/10.3153/AR22012
  • Parmaksız, A., Şeker, Ö. (2018). Genetic diversity of the endemic species shabbout (Arabibarbus grypus (Heckel, 1843)) based on partial cytochrome b sequences of mitochondrial DNA. Aquatic Research, 1(3), 103-109. https://doi.org/10.3153/AR18011
  • Spielman, D., Brook, B.W., Frankham, R. (2004). Most species are not driven to extinction before genetic factors impact them. Proceedings of the National Academy of Sciences, 101, 15261e15264. https://doi.org/10.1073/pnas.0403809101
There are 25 citations in total.

Details

Primary Language English
Subjects Hydrobiology
Journal Section Research Articles
Authors

Arif Parmaksız 0000-0003-0321-8198

Publication Date January 1, 2023
Submission Date September 1, 2022
Published in Issue Year 2023

Cite

APA Parmaksız, A. (2023). Mitochondrial DNA sequence analysis of Arabibarbus grypus (Heckel, 1843) living in Great Zab (Erbil, Iraq). Aquatic Research, 6(1), 19-25. https://doi.org/10.3153/AR23003

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