Araştırma Makalesi
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Silene fuscata'nın Anadolu'daki Varlığının Moleküler Açıdan Araştırılması

Yıl 2023, Cilt: 7 Sayı: 2, 164 - 170, 31.12.2023
https://doi.org/10.31594/commagene.1404268

Öz

Silene fuscata, Doğu Akdeniz, Kuzey Afrika ve Güney Avrupa'yı içeren geniş bir coğrafyaya yayılmış tek yıllık bir bitki türüdür. Akdeniz Bölgesi bu türün doğal yayılış alanı olarak bilinir. S. fuscata'nın Anadolu'da da yetiştiği birçok kapsamlı botanik çalışmada bildirilmiş olmakla birlikte türün mevcut durumu hiçbir zaman ayrıntılı olarak araştırılmamıştır. Bu makalede S. fuscata'nın Anadolu'daki varlığı incelenmiştir. Anadolu ve Anadolu dışından toplanan farklı Silene türlerinden nükleer ve kloroplast-DNA dizileri üretilerek bu bitki örneklerinin filogenetik ilişkileri irdelenmiştir. DNA dizi analizleri ve mevcut diğer kanıtlar S. fuscata’nın Anadolu’da yayılış göstermediğine işaret etmektedir.

Kaynakça

  • Aydin, Z., Ertekin, A.S., Långström, E., & Oxelman, B. (2014a). A new section of Silene (Caryophyllaceae) including a new species from South Anatolia, Turkey. Phytotaxa, 178(2), 098–112. http://doi.org/10.11646/phytotaxa.178.2.2
  • Aydin, Z., Marcussen, T., Ertekin, A.S., & Oxelman, B. (2014b). Marginal likelihood estimate comparisons to obtain optimal species delimitations in Silene sect. Cryptoneurae (Caryophyllaceae). PLoS One, 9e106990. https://doi.org/10.1371/journal.pone.0106990
  • Bakis Y, Babac MT, & Uslu E (2011). Updates and improvements of Turkish Plants Data Service (TÜBİVES). 6 th International Symposium on Health Informatics and Bioinformatics (HIBIT), (pp. 136-140). May 2-5, 2011, Izmir, Turkey.
  • Berardi, A.E., Betancourt Morejón, A.C., & Hopkins, R. (2022). Convergence without divergence in North American red-flowering Silene. Frontiers in Plant Science, 13, 945806. https://doi.org/10.3389/fpls.2022.945806
  • Coode, M.J.E., & Cullen, J. (1967). Silene L. In: Davis PH, editor. Flora of Turkey and the East Aegean Islands, Vol. 2. 1st ed. Edinburgh, UK: Edinburgh University Press, pp. 179–222.
  • Danin, A., & Fragman–Sapir, O. (2016) Flora of Israel and adjacent areas. Retrieved from: https://flora.org.il/en/plants/
  • Davis, P.H. (ed.). (1965–1985). Flora of Turkey and the East Aegean Islands, Vols.1–9. Edinburgh University Press, Edinburgh.
  • Davis, P.H., Mill, R.R., & Tan, K. (1988). Silene L. In: Davis, P.H., Mill, R.R., Tan, K. (Eds.). Flora of Turkey and the East Aegean Islands (Suppl. 1), Vol. 10. 1st ed. Edinburgh, UK: Edinburgh University Press, pp. 76–81.
  • Eggens, F., Jafari, F., Thollesson, M., Crameri, S., Zarre, S., & Oxelman, B. (2020). Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section. PhytoKeys 159, 1–34. https://doi.org/10.3897/phytokeys.159.51500
  • Erixon, P., & Oxelman, B. (2008). Reticulate or tree–like chloroplast DNA evolution in Sileneae (Caryophyllaceae)?, Molecular Phylogenetics and Evolution, 48, 313–325. https://doi.org/10.1016/j.ympev.2008.04.015
  • Greuter, W. (1997). Silene L. In: Strid, A. & Tan, K. (eds.) Flora Hellenica, Vol. 1, Koenigstein: Koeltz Scientific Books, pp. 239–323.
  • Greuter, W. (1995). Silene (Caryophyllaceae) in Greece: a subgeneric and sectional classification. Taxon, 44(4), 543–581. https://doi.org/10.2307/1223499
  • Güner, A., Aslan, S., Ekim, T., Vural, M. & Babaç, M.T. (2012). Türkiye Bitkileri Listesi (Damarlı Bitkiler). Nezahat Gökyiğit Botanik Bahçesi ve Flora Araştırmaları Derneği Yayını. İstanbul. Retrieved from: https://bizimbitkiler.org.tr/yeni/demos/technical/
  • Jafari, F., Zarre, S., Gholipour, A., Eggens, F., Rabeler, R.K, & Oxelman, B. (2020). A new taxonomic backbone for the infrageneric classification of the species-rich genus Silene (Caryophyllaceae). Taxon, 69, 337–368. https://doi.org/10.1002/tax.12230
  • Jeanmonod, D. (2015). Notes on Corsican flora, XXV. Candollea 70(1), 109–140. https://doi.org/10.15553/c2015v701a10
  • Medina, L., & Aedo, C. (2022). Vascular Plants from the Journey through Portugal (1797–1801) by Hoffmannsegg and Link at the Herbarium of the Real Jardín Botánico of Madrid. Plants, 11, 2438. https://doi.org/10.3390/plants11182438
  • Meikle, R.D. (1977). Silene L. in Meikle, R.D., (ed.), Flora of Cyprus, Vol: 1. Kew: Bentham– Moxon Trust and Royal Botanic Garden, 224–252.Mesbah, M. (2021). Etude taxonomique et biogéographique de quelques espèces du genre Silene L. (Caryophyllacées) en Algérie. Systématique, phylogénie et taxonomie. Université de Bejaia [Algérie], 2021. Français
  • Miller, M.A., Pfeiffer, W., & Schwartz, T. (2010). Creating the CIPRES science gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop, 14, 1‒8. Retrieved from https://www.phylo.org/ (accessed: 10 Oct 2023).
  • Naciri, Y., Du Pasquier, P-E., Lundberg, M., Jeanmonod, D., & Oxelman, B. (2017). A phylogenetic circumscription of Silene sect. Siphonomorpha (Caryophyllaceae) in the Mediterranean basin. Taxon, 66, 91–108. https://doi.org/10.12705/661.5
  • Naciri, Y., Toprak, Z., Prentice, H.C., Hugot, L., Troia, A., Burgarella, C., & Jeanmonod, D. (2022). Convergent morphological evolution in the Italicae section of Silene in the Mediterranean Basin. Frontiers in Plant Science, 13, 695958. https://doi.org/10.3389/fpls.2022.695958
  • Orcan, N., Binzet, R., & Yaylalioglu, E. (2004). The flora of Findikpinari (Mersin–Turkey) Plataeu. Flora Mediterrnea, 14, 309–345. ISSN 1120–4052.
  • Oxelman, B., & Lidén, M. (1995). Generic boundaries in the tribe Sileneae (Caryophyllaceae) as inferred from nuclear rDNA sequences. Taxon, 44, 525–542. https://doi.org/10.2307/1223498
  • Oxelman, B., Lidén, M., & Berglund, D. (1997). Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution, 206, 393– 410. https://doi.org/10.1007/BF00987959
  • Oxelman, B., Lidén, M., Rabeler, R.K., & Popp, M. (2001). A revised generic classification of the tribe Sileneae (Caryophyllaceae). Nordic Journal of Botany 20, 515–518. http://doi.org/10.1111/j.1756-1051.2000.tb00760.x
  • Oxelman, B., Rautenberg, A., Thollesson, M., Larsson, A., Frajman, B., Eggens, F., Petri, A., Aydın, Z., Töpel, M., & Brandtberg–Falkman, A. (2013). Sileneae taxonomy and systematics. Retrived from http://www.sileneae.info
  • Özuslu, E., & Tel, A.Z. (2008). Some Changes and Updating Processes of Localizations in Turkey's Flora (Flora of Turkey) Declared by Gaziantep/Turkey, Biological Diversity and Conservation, 1, 99–107. https://dergipark.org.tr/en/pub/biodicon
  • Petri, A., & Oxelman, B. (2011). Phylogenetic relationships within Silene (Caryophyllaceae) Sect. Physolychnis. Taxon, 60, 953–968. https://doi.org/10.1002/tax.604002
  • Petri, A., Pfeil, B.E., & Oxelman, B. (2013). Introgressive hybridization between anciently diverged lineages of Silene (Caryophyllaceae). PLoS One, 8(7), e67729. https://doi.org/10.1371/journal.pone.0067729
  • Pfeil, B.E., Toprak, Z., & Oxelman, B. (2017). Recombination provides evidence for ancient hybridisation in the Silene aegyptiaca (Caryophyllaceae) complex. Organisms Diversity and Evolution, 17, 717–726. https://doi.org/10.1007/s13127–017–0331–9
  • Prieto-Benítez, S., Millanes, A.M., Dötterl, S., & Giménez-Benavides, L. (2016). Comparative analyses of flower scent in Sileneae reveal a contrasting phylogenetic signal between night and day emissions. Ecology and Evolution, 6, 7869–7881. https://doi.org/10.1002/ece3.2377
  • Rambaut, A. (2018). FigTree v1.4.4. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh. Retrieved from http://tree.bio.ed.ac.uk/software/figtree/
  • Scherz, M.D., Glaw, F., Hutter, C.R., Bletz, M.C., Rakotoarison, A., Köhler, J., et al. (2019). Species complexes and the importance of Data Deficient classification in Red List assessments: The case of Hylobatrachus frogs. PLoS One, 14(8), e0219437. https://doi.org/10.1371/journal.pone.0219437
  • Stamatakis, A. (2014). RAxML Version 8: A tool for Phylogenetic Analysis and Post–Analysis of Large Phylogenies. Bioinformatics, 30, 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
  • Strid, A. (2018). In Vascular plants of Greece: An annotated checklist (Dimopoulos & al. 2013). Retrieved from: https://portal.cybertaxonomy.org/flora-greece/cdm_dataportal/taxon/84468f6d-881e-4412-9175-ace4f5de4146#
  • Swofford, D.L. (2002). PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0. Sunderland, Massachusetts, Sinauer Associates.
  • Swofford, D.L. (2020). Phylogenetic Analysis Using Parsimony (PAUP) (Version 4.0a169). Retrieved from: http://phylosolutions.com/paup-test/ (accessed: 20 Sep 2023)
  • Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution, 38, 3022–3027. https://doi.org/10.1093/molbev/msab120
  • Thiers, B. (2023) [continuously updated]). Index Herbariorum: a global directory of public 22 herbaria and associated staff. New York Botanical Garden’s Virtual Herbarium. Retrieved from http://sweetgum.nybg.org/science/ih/ (accessed 20 October 2023).
  • Toprak, Z., Pfeil, B.E., Jones, G., Marcussen, T., Ertekin, A.S., & Oxelman, B. (2016). Species delimitation with DISSECT: Evidence of high species diversity in the Silene aegyptiaca complex (Caryophyllaceae). Molecular Phylogenetics and Evolution, 102, 1–8. https://doi.org/10.1016/j.ympev.2016.05.024
  • Toprak, Z., & Yıldız, K. (2022). Conflicting signals in phylogenetic relatioships and taxonomy of Anatolian endemic Silene sordida (Caryophyllaceae). Phytotaxa, 548(2), 199–222. https://doi.org/10.11646/phytotaxa.548.2.5

Investigation of the Occurrence of Silene fuscata in Anatolia Based on Molecular Analysis

Yıl 2023, Cilt: 7 Sayı: 2, 164 - 170, 31.12.2023
https://doi.org/10.31594/commagene.1404268

Öz

Silene fuscata is an annual species distributed to a wide geography including Eastern Mediterranean, Northern Africa, and Southern Europe. The native range of this species is known as the Mediterranean Region. Presence of S. fuscata in Anatolia is reported by several comprehensive botanical literatures; however, the actual situation has never been investigated thoroughly. This study focuses on the occurrence of S. fuscata in Anatolia. In order to determine the existence of this species in the aforementioned area, nuclear and chloroplast-DNA sequence data from a wide range of Silene samples were analyzed. DNA sequence analyses and other available evidence display no support for the presence of S. fuscata in Anatolia.

Etik Beyan

N/A

Kaynakça

  • Aydin, Z., Ertekin, A.S., Långström, E., & Oxelman, B. (2014a). A new section of Silene (Caryophyllaceae) including a new species from South Anatolia, Turkey. Phytotaxa, 178(2), 098–112. http://doi.org/10.11646/phytotaxa.178.2.2
  • Aydin, Z., Marcussen, T., Ertekin, A.S., & Oxelman, B. (2014b). Marginal likelihood estimate comparisons to obtain optimal species delimitations in Silene sect. Cryptoneurae (Caryophyllaceae). PLoS One, 9e106990. https://doi.org/10.1371/journal.pone.0106990
  • Bakis Y, Babac MT, & Uslu E (2011). Updates and improvements of Turkish Plants Data Service (TÜBİVES). 6 th International Symposium on Health Informatics and Bioinformatics (HIBIT), (pp. 136-140). May 2-5, 2011, Izmir, Turkey.
  • Berardi, A.E., Betancourt Morejón, A.C., & Hopkins, R. (2022). Convergence without divergence in North American red-flowering Silene. Frontiers in Plant Science, 13, 945806. https://doi.org/10.3389/fpls.2022.945806
  • Coode, M.J.E., & Cullen, J. (1967). Silene L. In: Davis PH, editor. Flora of Turkey and the East Aegean Islands, Vol. 2. 1st ed. Edinburgh, UK: Edinburgh University Press, pp. 179–222.
  • Danin, A., & Fragman–Sapir, O. (2016) Flora of Israel and adjacent areas. Retrieved from: https://flora.org.il/en/plants/
  • Davis, P.H. (ed.). (1965–1985). Flora of Turkey and the East Aegean Islands, Vols.1–9. Edinburgh University Press, Edinburgh.
  • Davis, P.H., Mill, R.R., & Tan, K. (1988). Silene L. In: Davis, P.H., Mill, R.R., Tan, K. (Eds.). Flora of Turkey and the East Aegean Islands (Suppl. 1), Vol. 10. 1st ed. Edinburgh, UK: Edinburgh University Press, pp. 76–81.
  • Eggens, F., Jafari, F., Thollesson, M., Crameri, S., Zarre, S., & Oxelman, B. (2020). Phylogeny and species delimitation in Silene sect. Arenosae (Caryophyllaceae): a new section. PhytoKeys 159, 1–34. https://doi.org/10.3897/phytokeys.159.51500
  • Erixon, P., & Oxelman, B. (2008). Reticulate or tree–like chloroplast DNA evolution in Sileneae (Caryophyllaceae)?, Molecular Phylogenetics and Evolution, 48, 313–325. https://doi.org/10.1016/j.ympev.2008.04.015
  • Greuter, W. (1997). Silene L. In: Strid, A. & Tan, K. (eds.) Flora Hellenica, Vol. 1, Koenigstein: Koeltz Scientific Books, pp. 239–323.
  • Greuter, W. (1995). Silene (Caryophyllaceae) in Greece: a subgeneric and sectional classification. Taxon, 44(4), 543–581. https://doi.org/10.2307/1223499
  • Güner, A., Aslan, S., Ekim, T., Vural, M. & Babaç, M.T. (2012). Türkiye Bitkileri Listesi (Damarlı Bitkiler). Nezahat Gökyiğit Botanik Bahçesi ve Flora Araştırmaları Derneği Yayını. İstanbul. Retrieved from: https://bizimbitkiler.org.tr/yeni/demos/technical/
  • Jafari, F., Zarre, S., Gholipour, A., Eggens, F., Rabeler, R.K, & Oxelman, B. (2020). A new taxonomic backbone for the infrageneric classification of the species-rich genus Silene (Caryophyllaceae). Taxon, 69, 337–368. https://doi.org/10.1002/tax.12230
  • Jeanmonod, D. (2015). Notes on Corsican flora, XXV. Candollea 70(1), 109–140. https://doi.org/10.15553/c2015v701a10
  • Medina, L., & Aedo, C. (2022). Vascular Plants from the Journey through Portugal (1797–1801) by Hoffmannsegg and Link at the Herbarium of the Real Jardín Botánico of Madrid. Plants, 11, 2438. https://doi.org/10.3390/plants11182438
  • Meikle, R.D. (1977). Silene L. in Meikle, R.D., (ed.), Flora of Cyprus, Vol: 1. Kew: Bentham– Moxon Trust and Royal Botanic Garden, 224–252.Mesbah, M. (2021). Etude taxonomique et biogéographique de quelques espèces du genre Silene L. (Caryophyllacées) en Algérie. Systématique, phylogénie et taxonomie. Université de Bejaia [Algérie], 2021. Français
  • Miller, M.A., Pfeiffer, W., & Schwartz, T. (2010). Creating the CIPRES science gateway for inference of large phylogenetic trees. Proceedings of the Gateway Computing Environments Workshop, 14, 1‒8. Retrieved from https://www.phylo.org/ (accessed: 10 Oct 2023).
  • Naciri, Y., Du Pasquier, P-E., Lundberg, M., Jeanmonod, D., & Oxelman, B. (2017). A phylogenetic circumscription of Silene sect. Siphonomorpha (Caryophyllaceae) in the Mediterranean basin. Taxon, 66, 91–108. https://doi.org/10.12705/661.5
  • Naciri, Y., Toprak, Z., Prentice, H.C., Hugot, L., Troia, A., Burgarella, C., & Jeanmonod, D. (2022). Convergent morphological evolution in the Italicae section of Silene in the Mediterranean Basin. Frontiers in Plant Science, 13, 695958. https://doi.org/10.3389/fpls.2022.695958
  • Orcan, N., Binzet, R., & Yaylalioglu, E. (2004). The flora of Findikpinari (Mersin–Turkey) Plataeu. Flora Mediterrnea, 14, 309–345. ISSN 1120–4052.
  • Oxelman, B., & Lidén, M. (1995). Generic boundaries in the tribe Sileneae (Caryophyllaceae) as inferred from nuclear rDNA sequences. Taxon, 44, 525–542. https://doi.org/10.2307/1223498
  • Oxelman, B., Lidén, M., & Berglund, D. (1997). Chloroplast rps16 intron phylogeny of the tribe Sileneae (Caryophyllaceae). Plant Systematics and Evolution, 206, 393– 410. https://doi.org/10.1007/BF00987959
  • Oxelman, B., Lidén, M., Rabeler, R.K., & Popp, M. (2001). A revised generic classification of the tribe Sileneae (Caryophyllaceae). Nordic Journal of Botany 20, 515–518. http://doi.org/10.1111/j.1756-1051.2000.tb00760.x
  • Oxelman, B., Rautenberg, A., Thollesson, M., Larsson, A., Frajman, B., Eggens, F., Petri, A., Aydın, Z., Töpel, M., & Brandtberg–Falkman, A. (2013). Sileneae taxonomy and systematics. Retrived from http://www.sileneae.info
  • Özuslu, E., & Tel, A.Z. (2008). Some Changes and Updating Processes of Localizations in Turkey's Flora (Flora of Turkey) Declared by Gaziantep/Turkey, Biological Diversity and Conservation, 1, 99–107. https://dergipark.org.tr/en/pub/biodicon
  • Petri, A., & Oxelman, B. (2011). Phylogenetic relationships within Silene (Caryophyllaceae) Sect. Physolychnis. Taxon, 60, 953–968. https://doi.org/10.1002/tax.604002
  • Petri, A., Pfeil, B.E., & Oxelman, B. (2013). Introgressive hybridization between anciently diverged lineages of Silene (Caryophyllaceae). PLoS One, 8(7), e67729. https://doi.org/10.1371/journal.pone.0067729
  • Pfeil, B.E., Toprak, Z., & Oxelman, B. (2017). Recombination provides evidence for ancient hybridisation in the Silene aegyptiaca (Caryophyllaceae) complex. Organisms Diversity and Evolution, 17, 717–726. https://doi.org/10.1007/s13127–017–0331–9
  • Prieto-Benítez, S., Millanes, A.M., Dötterl, S., & Giménez-Benavides, L. (2016). Comparative analyses of flower scent in Sileneae reveal a contrasting phylogenetic signal between night and day emissions. Ecology and Evolution, 6, 7869–7881. https://doi.org/10.1002/ece3.2377
  • Rambaut, A. (2018). FigTree v1.4.4. Institute of Evolutionary Biology, University of Edinburgh, Edinburgh. Retrieved from http://tree.bio.ed.ac.uk/software/figtree/
  • Scherz, M.D., Glaw, F., Hutter, C.R., Bletz, M.C., Rakotoarison, A., Köhler, J., et al. (2019). Species complexes and the importance of Data Deficient classification in Red List assessments: The case of Hylobatrachus frogs. PLoS One, 14(8), e0219437. https://doi.org/10.1371/journal.pone.0219437
  • Stamatakis, A. (2014). RAxML Version 8: A tool for Phylogenetic Analysis and Post–Analysis of Large Phylogenies. Bioinformatics, 30, 1312–1313. https://doi.org/10.1093/bioinformatics/btu033
  • Strid, A. (2018). In Vascular plants of Greece: An annotated checklist (Dimopoulos & al. 2013). Retrieved from: https://portal.cybertaxonomy.org/flora-greece/cdm_dataportal/taxon/84468f6d-881e-4412-9175-ace4f5de4146#
  • Swofford, D.L. (2002). PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0. Sunderland, Massachusetts, Sinauer Associates.
  • Swofford, D.L. (2020). Phylogenetic Analysis Using Parsimony (PAUP) (Version 4.0a169). Retrieved from: http://phylosolutions.com/paup-test/ (accessed: 20 Sep 2023)
  • Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution, 38, 3022–3027. https://doi.org/10.1093/molbev/msab120
  • Thiers, B. (2023) [continuously updated]). Index Herbariorum: a global directory of public 22 herbaria and associated staff. New York Botanical Garden’s Virtual Herbarium. Retrieved from http://sweetgum.nybg.org/science/ih/ (accessed 20 October 2023).
  • Toprak, Z., Pfeil, B.E., Jones, G., Marcussen, T., Ertekin, A.S., & Oxelman, B. (2016). Species delimitation with DISSECT: Evidence of high species diversity in the Silene aegyptiaca complex (Caryophyllaceae). Molecular Phylogenetics and Evolution, 102, 1–8. https://doi.org/10.1016/j.ympev.2016.05.024
  • Toprak, Z., & Yıldız, K. (2022). Conflicting signals in phylogenetic relatioships and taxonomy of Anatolian endemic Silene sordida (Caryophyllaceae). Phytotaxa, 548(2), 199–222. https://doi.org/10.11646/phytotaxa.548.2.5
Toplam 40 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Evrimsel Biyoloji (Diğer)
Bölüm Araştırma Makaleleri
Yazarlar

Zeynep Toprak 0000-0002-2103-4141

Erken Görünüm Tarihi 31 Aralık 2023
Yayımlanma Tarihi 31 Aralık 2023
Gönderilme Tarihi 13 Aralık 2023
Kabul Tarihi 30 Aralık 2023
Yayımlandığı Sayı Yıl 2023 Cilt: 7 Sayı: 2

Kaynak Göster

APA Toprak, Z. (2023). Investigation of the Occurrence of Silene fuscata in Anatolia Based on Molecular Analysis. Commagene Journal of Biology, 7(2), 164-170. https://doi.org/10.31594/commagene.1404268
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