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Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method

Year 2023, Volume: 6 Issue: 2, 145 - 151, 18.12.2023

Hanifi Kebiroglu Mücahit Yılmaz

https://doi.org/10.54565/jphcfum.1332113

Abstract

The research focused on investigating and optimizing the interaction of the hormone Norepinephrine (Noradrenaline), which acts as a neurotransmitter, with Mg+2 atoms at the molecular level. To do this, we used GaussView 6.0.16 to generate the molecular structure. Then, it employed Gaussian 09: AS64L-G09RevD.01 program to optimize the molecular structures of Norepinephrine using the DFT method and SDD basis set, and the Mg atom doped molecule using the DFT method and LanL2MB basis set. Various quantum mechanical calculations were conducted on the molecule, including Fourier Transform Infrared spectroscopy (FT-IR), Nuclear Magnetic Resonance Spectroscopy (NMR), HOMO-LUMO structure with the energy level diagram, UV-visible absorption, and density of states (DOS). These calculations provide important insights into the behavior and properties of the Norepinephrine-Mg+2 complex at the molecular level.

Keywords

Norepinephrine Nuclear Magnetic Resonance spectroscopy Fourier Transform Infrared spectroscopy UV-visible

References

  • Breton-Provencher V, Drummond GT and Sur M (2021) Locus Coeruleus Norepinephrine in Learned Behavior: Anatomical Modularity and Spatiotemporal Integration in Targets. Front. Neural Circuits 15:638007. doi: 10.3389/fncir.2021.638007
  • Gümrü, S. , Şahin, C. & Arıcıoğlu, F. (2013). Yeni bir nörotransmitter/nöromodülatör olarak agmatine genel bir bakış . Clinical and Experimental Health Sciences , 3 (5) , 0-0
  • Durmaz, C. & Şen, E. (2022). Kök Hücrelerde DNA Hasarı ve Onarımı . Tıp Fakültesi Klinikleri Dergisi , 5 (1) , 19-26 .
  • Schwalfenberg, G. K., & Genuis, S. J. (2017). The Importance of Magnesium in Clinical Healthcare. Scientifica, 2017, 4179326. https://doi.org/10.1155/2017/4179326
  • Dennington R.D., Keith T.A., Millam J.M., GaussView 6.0. 16, Semichem. Inc., Shawnee Mission KS, 2016.
  • Frisch M.J., Trucks G.W., Schlegel H.B., Scuseria G.E., Robb M.A., Cheeseman J.R., Nakatsuji H., Gaussian09 Revision D. 01, Gaussian Inc.,Wallingford CT, 2009.
  • Sebastianelli, P, Pereyra, RG. Frontier molecular orbital analysis for determining the equilibrium geometries of atmospheric prenucleation complexes. Int J Quantum Chem. 2020; 120:e26060. https://doi.org/10.1002/qua.26060
  • Kumer, A. , Sarker, M. N. & Paul, S. (2019). The thermo physical, HOMO, LUMO, Vibrational spectroscopy and QSAR study of morphonium formate and acetate Ionic Liquid Salts using computational method. Turkish Computational and Theoretical Chemistry, 3 (2), 59-68.
  • Tanış, E. (2022). A study of silicon and germanium-based molecules in terms of solar cell devices performance. Turkish Journal of Chemistry, 46(5), 1607-1619.
  • Tanış, E. (2022). New optoelectronic material based on biguanide for orange and yellow organic light emitting diode: A combined experimental and theoretical study. Journal of Molecular Liquids, 358, 119161.
  • Cameron, J. M., et al. (2020). Chapter 10 - Vibrational spectroscopic analysis and quantification of proteins in human blood plasma and serum. Vibrational Spectroscopy in Protein Research. Y. Ozaki, M. Baranska, I. K. Lednev and B. R. Wood, Academic Press: 269-314.
  • Siesler, H. W. (2016). Vibrational Spectroscopy. Reference Module in Materials Science and Materials Engineering, Elsevier. Tanış, E. (2022). Study of Electronic, Optoelectronic and Photonic Properties of NBB Material in Solvent Environments. Journal of Electronic Materials, 51(9), 4978-4985.
  • Thambiratnam, K., et al. (2020). Chapter 9 - Application of two-dimensional materials in fiber laser systems. Nano-Optics. S. Thomas, Y. Grohens, G. Vignaud, N. Kalarikkal and J. James, Elsevier: 227-264.
  • Nerli, S., McShan, A. C., & Sgourakis, N. G. (2018). Chemical shift-based methods in NMR structure determination. Progress in nuclear magnetic resonance spectroscopy, 106-107, 1–25.
  • Nerli, S., et al. (2018). "Chemical shift-based methods in NMR structure determination." Progress in Nuclear Magnetic Resonance Spectroscopy 106-107: 1-25.
  • Schmid, F. X. 2001. Biological macromolecules: UV‐visible spectrophotometry. eLS.
  • Pandey, U.; Srivastava, M.; Singh, R.; Yadav, R. DFT study of conformational and vibrational characteristics of 2-(2-hydroxyphenyl) benzothiazole molecule. Spectrochim. Acta Part A Mol. Biomol. Spectrosc. 2014, 129, 61–73.
  • Xie, B.; Wang, Q.; Long, X.; Hu, S.; Gao, T. Density Function Theory Study on the Reaction Mechanism of Cerium with Oxygen for Ce-bearing Aerosol Particle Formation. J. Wuhan Univ. Technol. Sci. Ed. 2020, 35, 501–505.
  • Magyar, R.; Tretiak, S.; Gao, Y.; Wang, H.-L.; Shreve, A. A joint theoretical and experimental study of phenylene–acetylene molecular wires. Chem. Phys. Lett. 2005, 401, 149–156.

Year 2023, Volume: 6 Issue: 2, 145 - 151, 18.12.2023

Hanifi Kebiroglu Mücahit Yılmaz

https://doi.org/10.54565/jphcfum.1332113

Abstract

References

  • Breton-Provencher V, Drummond GT and Sur M (2021) Locus Coeruleus Norepinephrine in Learned Behavior: Anatomical Modularity and Spatiotemporal Integration in Targets. Front. Neural Circuits 15:638007. doi: 10.3389/fncir.2021.638007
  • Gümrü, S. , Şahin, C. & Arıcıoğlu, F. (2013). Yeni bir nörotransmitter/nöromodülatör olarak agmatine genel bir bakış . Clinical and Experimental Health Sciences , 3 (5) , 0-0
  • Durmaz, C. & Şen, E. (2022). Kök Hücrelerde DNA Hasarı ve Onarımı . Tıp Fakültesi Klinikleri Dergisi , 5 (1) , 19-26 .
  • Schwalfenberg, G. K., & Genuis, S. J. (2017). The Importance of Magnesium in Clinical Healthcare. Scientifica, 2017, 4179326. https://doi.org/10.1155/2017/4179326
  • Dennington R.D., Keith T.A., Millam J.M., GaussView 6.0. 16, Semichem. Inc., Shawnee Mission KS, 2016.
  • Frisch M.J., Trucks G.W., Schlegel H.B., Scuseria G.E., Robb M.A., Cheeseman J.R., Nakatsuji H., Gaussian09 Revision D. 01, Gaussian Inc.,Wallingford CT, 2009.
  • Sebastianelli, P, Pereyra, RG. Frontier molecular orbital analysis for determining the equilibrium geometries of atmospheric prenucleation complexes. Int J Quantum Chem. 2020; 120:e26060. https://doi.org/10.1002/qua.26060
  • Kumer, A. , Sarker, M. N. & Paul, S. (2019). The thermo physical, HOMO, LUMO, Vibrational spectroscopy and QSAR study of morphonium formate and acetate Ionic Liquid Salts using computational method. Turkish Computational and Theoretical Chemistry, 3 (2), 59-68.
  • Tanış, E. (2022). A study of silicon and germanium-based molecules in terms of solar cell devices performance. Turkish Journal of Chemistry, 46(5), 1607-1619.
  • Tanış, E. (2022). New optoelectronic material based on biguanide for orange and yellow organic light emitting diode: A combined experimental and theoretical study. Journal of Molecular Liquids, 358, 119161.
  • Cameron, J. M., et al. (2020). Chapter 10 - Vibrational spectroscopic analysis and quantification of proteins in human blood plasma and serum. Vibrational Spectroscopy in Protein Research. Y. Ozaki, M. Baranska, I. K. Lednev and B. R. Wood, Academic Press: 269-314.
  • Siesler, H. W. (2016). Vibrational Spectroscopy. Reference Module in Materials Science and Materials Engineering, Elsevier. Tanış, E. (2022). Study of Electronic, Optoelectronic and Photonic Properties of NBB Material in Solvent Environments. Journal of Electronic Materials, 51(9), 4978-4985.
  • Thambiratnam, K., et al. (2020). Chapter 9 - Application of two-dimensional materials in fiber laser systems. Nano-Optics. S. Thomas, Y. Grohens, G. Vignaud, N. Kalarikkal and J. James, Elsevier: 227-264.
  • Nerli, S., McShan, A. C., & Sgourakis, N. G. (2018). Chemical shift-based methods in NMR structure determination. Progress in nuclear magnetic resonance spectroscopy, 106-107, 1–25.
  • Nerli, S., et al. (2018). "Chemical shift-based methods in NMR structure determination." Progress in Nuclear Magnetic Resonance Spectroscopy 106-107: 1-25.
  • Schmid, F. X. 2001. Biological macromolecules: UV‐visible spectrophotometry. eLS.
  • Pandey, U.; Srivastava, M.; Singh, R.; Yadav, R. DFT study of conformational and vibrational characteristics of 2-(2-hydroxyphenyl) benzothiazole molecule. Spectrochim. Acta Part A Mol. Biomol. Spectrosc. 2014, 129, 61–73.
  • Xie, B.; Wang, Q.; Long, X.; Hu, S.; Gao, T. Density Function Theory Study on the Reaction Mechanism of Cerium with Oxygen for Ce-bearing Aerosol Particle Formation. J. Wuhan Univ. Technol. Sci. Ed. 2020, 35, 501–505.
  • Magyar, R.; Tretiak, S.; Gao, Y.; Wang, H.-L.; Shreve, A. A joint theoretical and experimental study of phenylene–acetylene molecular wires. Chem. Phys. Lett. 2005, 401, 149–156.
There are 19 citations in total.

Details

Primary Language English
Subjects Classical Physics (Other)
Journal Section Articles
Authors

Hanifi Kebiroglu 0000-0002-6764-3364

Mücahit Yılmaz 0000-0003-0048-2233

Publication Date December 18, 2023
Submission Date July 24, 2023
Acceptance Date August 3, 2023
Published in Issue Year 2023 Volume: 6 Issue: 2

Cite

APA Kebiroglu, H., & Yılmaz, M. (2023). Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials, 6(2), 145-151. https://doi.org/10.54565/jphcfum.1332113
AMA Kebiroglu H, Yılmaz M. Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials. December 2023;6(2):145-151. doi:10.54565/jphcfum.1332113
Chicago Kebiroglu, Hanifi, and Mücahit Yılmaz. “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”. Journal of Physical Chemistry and Functional Materials 6, no. 2 (December 2023): 145-51. https://doi.org/10.54565/jphcfum.1332113.
EndNote Kebiroglu H, Yılmaz M (December 1, 2023) Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials 6 2 145–151.
IEEE H. Kebiroglu and M. Yılmaz, “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”, Journal of Physical Chemistry and Functional Materials, vol. 6, no. 2, pp. 145–151, 2023, doi: 10.54565/jphcfum.1332113.
ISNAD Kebiroglu, Hanifi - Yılmaz, Mücahit. “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”. Journal of Physical Chemistry and Functional Materials 6/2 (December 2023), 145-151. https://doi.org/10.54565/jphcfum.1332113.
JAMA Kebiroglu H, Yılmaz M. Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials. 2023;6:145–151.
MLA Kebiroglu, Hanifi and Mücahit Yılmaz. “Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method”. Journal of Physical Chemistry and Functional Materials, vol. 6, no. 2, 2023, pp. 145-51, doi:10.54565/jphcfum.1332113.
Vancouver Kebiroglu H, Yılmaz M. Investigation of UV-Visible Absorption Quantum Effects Doped of Norepinephrine, Mg+2 Atom by Using DFT Method. Journal of Physical Chemistry and Functional Materials. 2023;6(2):145-51.