Research Article
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Determination of genetic variations by using mitochondrial DNA cyt b sequences in populations of Carasobarbus luteus (Cyprinidae)

Year 2021, Volume: 4 Issue: 4, 313 - 320, 01.10.2021

Arif Parmaksız

https://doi.org/10.3153/AR21026

Abstract

As the human population increases, freshwater fish has become an important alternative source of protein to meet the need of protein. Especially numerous fish species from the family Cyprinidae are consumed by the people. Among these fish, Carasobarbus luteus (Heckel, 1843) is also one of the most preferred species thanks to its edible flesh as well as its low price. Since it is economically important, there has been the pressure of overfishing and invasive species on the populations of this species, resulting in decrease of the sources day by day. Management and conservation of the species have importance therefore it is need to know its genetic variations in the first place. The present study analyzed sequences of mtDNA cyt b locus and established the genetic variability following the collection of 65 individuals from five different localities in diverse river systems where C. luteus populations naturally inhabit. Sequence analysis revealed 13 polymorphic sites and 5 haplotypes. Birecik was the locality with the highest value in terms of both haplotype diversity and nucleotide diversity, Diyarbakır was the one with the lowest value. Tajima’s D and Fu’s Fs values were found to be statistically insignificant for all the localities. Population genetic diversity of this fish species was found to be low in terms of mtDNA cyt b marker. It is recommended to take measures to stop the loss of genetic diversity and to start conservation studies.

Keywords

Carasobarbus luteus cyt b haplotypes Genetic diversity Euphrates River Tigris River

Supporting Institution

This study was funded by Harran University Research Fund

Project Number

17217

References

  • Aral, F., Doğu, Z., Şahinöz, E. (2014). Comparion of spermatological characteristics in Carasobarbus luteus (Heckel, 1843) and Carassius carassius living in Atatürk Dam Lake. Türk Tarım – Gıda Bilim ve Teknoloji Dergisi, 2(4), 185-189. https://doi.org/10.24925/turjaf.v2i4.185-189.95
  • Barrett, R.D.H., Schluter, D. (2008). Adaptation from standing genetic variation. Trends in Ecology & Evolution, 23(1), 38-44. https://doi.org/10.1016/j.tree.2007.09.008
  • Bilici, S., Cicek, T., Ünlü, E. (2017). Observation on the age, growth and somatic condition of Carasobarbus luteus (Heckel, 1843) and Capoeta trutta (Heckel, 1843) (Cyprinidae) in the Tigris River, Turkey. Iranian Journal of Fisheries Sciences, 16(1), 170-187.
  • Briolay, J., Nicols Galtier, N., Brito, R. M., Bouvet, Y. (1998). Molecular Phylogeny of Cyprinidae Inferred from cytochrome b DNA Sequences. Molecular Phylogenetics and Evolution, 9(1), 100-108. https://doi.org/10.1006/mpev.1997.0441
  • Coad, B. W. (2010). Freshwater Fishes of Iraq. Sofia-Moscow. Pensoft Publishers, 294 pp. ISBN: 978-954-642-530-0
  • Cognetti, G., Maltagliati, F. (2000). Biodiversity and adaptive mechanisms in brackish water fauna. Marine Pollution Bulletin, 40, 7-14. https://doi.org/10.1016/S0025-326X(99)00173-3
  • Çelik, B., Saler, S. (2016). Atatürk baraj gölü’nde yaşayan bizir, Carasobarbus luteus (Heckel, 1843)’un sindirim sistemi içeriği. Journal of Limnology and Freshwater Fisheries Research, 2(2), 83-93. https://doi.org/10.17216/LimnoFish-5000139495
  • Deng, Y., Song, N., Liu, M., Gao, T.X. (2014). Population genetic analysis of Perinereis aibuhitensis based on the mitochondrial DNA cyt b. Acta Hydrobiologica Sinica, 38(3), 597-601.
  • Fayazi, J., Moradi, M., Rahimi, G., Ashtyani, R., Galledari, H. (2006). Genetic differentiation and phylogenetic relationships among Barbus xanthopterus (Cyprinidae) populations in south west of Iran using mitochondrial DNA markers. Pakistan Journal of Biological Science, 9, 2249-2254. https://doi.org/10.3923/pjbs.2006.2249.2254
  • Falush, D., Stephens, M., Pritchard, J.K. (2003). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587. https://doi.org/10.1093/genetics/164.4.1567
  • Frankham, R., Briscoe, D.A., Ballou, J.D. (2002). Introduction to Conservation Genetics. Cambridge University Press. ISBN: 9780511809002 https://doi.org/10.1017/CBO9780511808999
  • Goudie, A.S. (2018). Human Impact on the Natural Environment. Wiley-Blackwell, ISBN: 978-1-119-40355-5
  • Gökçek, K. Akyurt, I. (2008). Age and Growth Characteristics of Himri Barbel (Barbus luteus Heckel, 1843 in Orontes River, Turkey. Turkish Journal of Zoology, 32, 461-467.
  • Gruenthal, K.M., Acheson, L.K., Burton, R.S. (2007). Genetic structure of natural populations of California red abalone (Haliotis rufescens) using multiple genetic markers. Marina Biology, 152, 1237-1248. https://doi.org/10.1007/s00227-007-0771-4
  • Kuru, M. (1979). The fresh water fish of South-eastern Turkey-2 (Euphrates-Tigris sisteme). Hacettepe Bulletin of Natural Sciences and Engineering, 7-8, 105-114.
  • Liu, Y., Li, C.H., Su, X.R., Wang, M.Q., Li, Y.Y., Li, Y. & Li, T.W. (2013). Cloning and 254 characterization of hemerythrin gene from Sipuncula Phascolosoma esculenta. Genes & Genomics, 35(1), 95-100. https://doi.org/10.1007/s13258-013-0073-9
  • Liu, B.H. (2017). Statistical Genomics: Linkage, Mapping, and QTL Analysis. CRC Press. ISBN: 9780367400743 https://doi.org/10.1201/9780203738658
  • Maltagliati, F., D, G. G., Barbieri, M., Castelli, A., Dini, F. (2010). Phylogeography and genetic structure of the edible sea urchin Paracentrotus lividus (Echinodermata: Echinoidea) inferred from the mitochondrial cytochrome b gene. Biological Journal of the Linnean Society, 100(4), 910-923. https://doi.org/10.1111/j.1095-8312.2010.01482.x
  • Manel, S., Guerin, P. E., Mouillot, D., Blanchet, S., Velez, L., Albouy, C., Pellissier, L. (2020). Global determinants of freshwater and marine fish genetic diversity. Nature Communications, 11(1), 692. https://doi.org/10.1038/s41467-020-14409-7
  • Mansoor, N.T., Al-Nasiri, F.S., Falah, A.B. (2020). New record of six species of Myxozoan parasites Myxobolus in Carasobarbus luteus from Tigris River at Baghdad city, Iraq. Tikrit Journal of Pure Science, 25(1), 42. https://doi.org/10.25130/j.v25i1.932
  • Parmaksız, A., Oymak, S. A., Dogan, N., Naim, D. M., Unlu, E. (2017). Reproductive characteristics of an invasive species Carassius gibelio (Bloch, 1782) in Ataturk Dam Lake, Turkey. Indian Journal of Fisheries, 64(4), 28-33. https://doi.org/10.21077/ijf.2017.64.4.67478-04
  • Parmaksız, A., Şeker, Ö. (2018). Genetic diversity of the endemic species Shabbout (Arabibarbus grypus (Heckel, 1843)) based on partial cytochrome b sequences of mitochondrial DNA. Aquatic Research, 1(3), 103-109. https://doi.org/10.3153/AR18011 Parmaksız, A. ve Altundağ, A. (2018). Fırat ve Dicle nehrinde yaşayan Achantobrama marmid (Heckel, 1843) popülasyonlarında genetik çeşitliliğin mtDNA cyt b gen dizileri kullanılarak belirlenmesi. Harran Üniversitesi Veteriner Fakültesi Dergisi, 7(1), 74-78. https://doi.org/10.31196/huvfd.470797
  • Parmaksız, A., Eskici, H.K. (2018). Genetic variation of yellow barbell (Carasobarbus luteus (Heckel, 1843)) from four populations using mitochondrial DNA COI gene sequences. Applied Ecology and Environmental Research, 16(2), 1673-1682. https://doi.org/10.15666/aeer/1602_16731682
  • Parmaksız, A. (2020). Population genetic diversity of yellow barbell (Carasobarbus luteus) from Kueik, Euphrates and Tigris Rivers based on mitochondrial DNA D-loop sequences. Turkish Journal of Fisheries and Aquatic Science, 20(1), 79-86. https://doi.org/10.4194/1303-2712-v20_1_08
  • Rahemo, Z. I., Al-Shatter, N.M. (2012). Observations on reproductive organs and tissues of two freshwater Cyprinid fishes. Trends in Fisheries Research, 1(2), 42-48.
  • Rozas, J., Sanchez- DelBarrio, J. C., Messeguer, X., Rozas, R. (2003). DnaSP DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497. https://doi.org/10.1093/bioinformatics/btg359
  • Ryman, N. (1991). Conservation genetics considerations in fishery management. Journal of Fish Biology, 39, 211-224. https://doi.org/10.1111/j.1095-8649.1991.tb05085.x
  • Saraswat, D., Lakra, W.S., Nautiyal, P., Goswami, M., Shyamakant, K., Malakar, A. (2014). Genetic characterization of Clupisoma garua (Hamilton 1822) from six Indian populations using mtDNA cytochrome b gene. Mitochondrial DNA, 25(1), 70-77. https://doi.org/10.3109/19401736.2013.782014
  • Spielman, D., Brook, B.W., Frankham, R., (2004). Most species are not driven to extinction before genetic factors impact them. Proceedings of The National Academy of Sciences of The United States of America, 101(42), 15261-15264. https://doi.org/10.1073/pnas.0403809101
  • Ünlü, E. (1991). A study on the biological characteristics of Capoeta trutta (Heckel, 1843) living in the Tigris River, Turkey. Turkish Journal of Zoology,15, 22-38.
  • Ünlü, E., Özbay, C., Kilic, A., Coskun, Y., Şeşen, R. (1997). GAP’ın faunaya etkileri. Türkiye Çevre Vakfı Yayını, 125, 79‐102. Ward, R.D. (2000). Genetics in fisheries management. Hydrobiologia, 420, 191-201. https://doi.org/10.1023/A:1003928327503
  • Xia, L., Guo, B., Ye, Y., Li, J., Wu, C. (2016). Determination of genetic diversity of the cuttlefish Sepiella japonica in habiting Chinese coastal waters using the mitochondrial D-loop region: The valuable inspiration to artificial releasing Project. Biochemical Systematics and Ecology, 69, 274-282. https://doi.org/10.1016/j.bse.2016.05.015
  • Zhang, Q., Sun, C., Zhu, Y., Xu, N., Liu, H. (2020). Genetic diversity and structure of the round-tailed paradise fish (Macropodus ocellatus): Implications for population management. Global Ecology and Conservation, 21(2020), e00876. https://doi.org/10.1016/j.gecco.2019.e00876

Year 2021, Volume: 4 Issue: 4, 313 - 320, 01.10.2021

Arif Parmaksız

https://doi.org/10.3153/AR21026

Abstract

Project Number

17217

References

  • Aral, F., Doğu, Z., Şahinöz, E. (2014). Comparion of spermatological characteristics in Carasobarbus luteus (Heckel, 1843) and Carassius carassius living in Atatürk Dam Lake. Türk Tarım – Gıda Bilim ve Teknoloji Dergisi, 2(4), 185-189. https://doi.org/10.24925/turjaf.v2i4.185-189.95
  • Barrett, R.D.H., Schluter, D. (2008). Adaptation from standing genetic variation. Trends in Ecology & Evolution, 23(1), 38-44. https://doi.org/10.1016/j.tree.2007.09.008
  • Bilici, S., Cicek, T., Ünlü, E. (2017). Observation on the age, growth and somatic condition of Carasobarbus luteus (Heckel, 1843) and Capoeta trutta (Heckel, 1843) (Cyprinidae) in the Tigris River, Turkey. Iranian Journal of Fisheries Sciences, 16(1), 170-187.
  • Briolay, J., Nicols Galtier, N., Brito, R. M., Bouvet, Y. (1998). Molecular Phylogeny of Cyprinidae Inferred from cytochrome b DNA Sequences. Molecular Phylogenetics and Evolution, 9(1), 100-108. https://doi.org/10.1006/mpev.1997.0441
  • Coad, B. W. (2010). Freshwater Fishes of Iraq. Sofia-Moscow. Pensoft Publishers, 294 pp. ISBN: 978-954-642-530-0
  • Cognetti, G., Maltagliati, F. (2000). Biodiversity and adaptive mechanisms in brackish water fauna. Marine Pollution Bulletin, 40, 7-14. https://doi.org/10.1016/S0025-326X(99)00173-3
  • Çelik, B., Saler, S. (2016). Atatürk baraj gölü’nde yaşayan bizir, Carasobarbus luteus (Heckel, 1843)’un sindirim sistemi içeriği. Journal of Limnology and Freshwater Fisheries Research, 2(2), 83-93. https://doi.org/10.17216/LimnoFish-5000139495
  • Deng, Y., Song, N., Liu, M., Gao, T.X. (2014). Population genetic analysis of Perinereis aibuhitensis based on the mitochondrial DNA cyt b. Acta Hydrobiologica Sinica, 38(3), 597-601.
  • Fayazi, J., Moradi, M., Rahimi, G., Ashtyani, R., Galledari, H. (2006). Genetic differentiation and phylogenetic relationships among Barbus xanthopterus (Cyprinidae) populations in south west of Iran using mitochondrial DNA markers. Pakistan Journal of Biological Science, 9, 2249-2254. https://doi.org/10.3923/pjbs.2006.2249.2254
  • Falush, D., Stephens, M., Pritchard, J.K. (2003). Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics, 164, 1567-1587. https://doi.org/10.1093/genetics/164.4.1567
  • Frankham, R., Briscoe, D.A., Ballou, J.D. (2002). Introduction to Conservation Genetics. Cambridge University Press. ISBN: 9780511809002 https://doi.org/10.1017/CBO9780511808999
  • Goudie, A.S. (2018). Human Impact on the Natural Environment. Wiley-Blackwell, ISBN: 978-1-119-40355-5
  • Gökçek, K. Akyurt, I. (2008). Age and Growth Characteristics of Himri Barbel (Barbus luteus Heckel, 1843 in Orontes River, Turkey. Turkish Journal of Zoology, 32, 461-467.
  • Gruenthal, K.M., Acheson, L.K., Burton, R.S. (2007). Genetic structure of natural populations of California red abalone (Haliotis rufescens) using multiple genetic markers. Marina Biology, 152, 1237-1248. https://doi.org/10.1007/s00227-007-0771-4
  • Kuru, M. (1979). The fresh water fish of South-eastern Turkey-2 (Euphrates-Tigris sisteme). Hacettepe Bulletin of Natural Sciences and Engineering, 7-8, 105-114.
  • Liu, Y., Li, C.H., Su, X.R., Wang, M.Q., Li, Y.Y., Li, Y. & Li, T.W. (2013). Cloning and 254 characterization of hemerythrin gene from Sipuncula Phascolosoma esculenta. Genes & Genomics, 35(1), 95-100. https://doi.org/10.1007/s13258-013-0073-9
  • Liu, B.H. (2017). Statistical Genomics: Linkage, Mapping, and QTL Analysis. CRC Press. ISBN: 9780367400743 https://doi.org/10.1201/9780203738658
  • Maltagliati, F., D, G. G., Barbieri, M., Castelli, A., Dini, F. (2010). Phylogeography and genetic structure of the edible sea urchin Paracentrotus lividus (Echinodermata: Echinoidea) inferred from the mitochondrial cytochrome b gene. Biological Journal of the Linnean Society, 100(4), 910-923. https://doi.org/10.1111/j.1095-8312.2010.01482.x
  • Manel, S., Guerin, P. E., Mouillot, D., Blanchet, S., Velez, L., Albouy, C., Pellissier, L. (2020). Global determinants of freshwater and marine fish genetic diversity. Nature Communications, 11(1), 692. https://doi.org/10.1038/s41467-020-14409-7
  • Mansoor, N.T., Al-Nasiri, F.S., Falah, A.B. (2020). New record of six species of Myxozoan parasites Myxobolus in Carasobarbus luteus from Tigris River at Baghdad city, Iraq. Tikrit Journal of Pure Science, 25(1), 42. https://doi.org/10.25130/j.v25i1.932
  • Parmaksız, A., Oymak, S. A., Dogan, N., Naim, D. M., Unlu, E. (2017). Reproductive characteristics of an invasive species Carassius gibelio (Bloch, 1782) in Ataturk Dam Lake, Turkey. Indian Journal of Fisheries, 64(4), 28-33. https://doi.org/10.21077/ijf.2017.64.4.67478-04
  • Parmaksız, A., Şeker, Ö. (2018). Genetic diversity of the endemic species Shabbout (Arabibarbus grypus (Heckel, 1843)) based on partial cytochrome b sequences of mitochondrial DNA. Aquatic Research, 1(3), 103-109. https://doi.org/10.3153/AR18011 Parmaksız, A. ve Altundağ, A. (2018). Fırat ve Dicle nehrinde yaşayan Achantobrama marmid (Heckel, 1843) popülasyonlarında genetik çeşitliliğin mtDNA cyt b gen dizileri kullanılarak belirlenmesi. Harran Üniversitesi Veteriner Fakültesi Dergisi, 7(1), 74-78. https://doi.org/10.31196/huvfd.470797
  • Parmaksız, A., Eskici, H.K. (2018). Genetic variation of yellow barbell (Carasobarbus luteus (Heckel, 1843)) from four populations using mitochondrial DNA COI gene sequences. Applied Ecology and Environmental Research, 16(2), 1673-1682. https://doi.org/10.15666/aeer/1602_16731682
  • Parmaksız, A. (2020). Population genetic diversity of yellow barbell (Carasobarbus luteus) from Kueik, Euphrates and Tigris Rivers based on mitochondrial DNA D-loop sequences. Turkish Journal of Fisheries and Aquatic Science, 20(1), 79-86. https://doi.org/10.4194/1303-2712-v20_1_08
  • Rahemo, Z. I., Al-Shatter, N.M. (2012). Observations on reproductive organs and tissues of two freshwater Cyprinid fishes. Trends in Fisheries Research, 1(2), 42-48.
  • Rozas, J., Sanchez- DelBarrio, J. C., Messeguer, X., Rozas, R. (2003). DnaSP DNA polymorphism analyses by the coalescent and other methods. Bioinformatics, 19, 2496-2497. https://doi.org/10.1093/bioinformatics/btg359
  • Ryman, N. (1991). Conservation genetics considerations in fishery management. Journal of Fish Biology, 39, 211-224. https://doi.org/10.1111/j.1095-8649.1991.tb05085.x
  • Saraswat, D., Lakra, W.S., Nautiyal, P., Goswami, M., Shyamakant, K., Malakar, A. (2014). Genetic characterization of Clupisoma garua (Hamilton 1822) from six Indian populations using mtDNA cytochrome b gene. Mitochondrial DNA, 25(1), 70-77. https://doi.org/10.3109/19401736.2013.782014
  • Spielman, D., Brook, B.W., Frankham, R., (2004). Most species are not driven to extinction before genetic factors impact them. Proceedings of The National Academy of Sciences of The United States of America, 101(42), 15261-15264. https://doi.org/10.1073/pnas.0403809101
  • Ünlü, E. (1991). A study on the biological characteristics of Capoeta trutta (Heckel, 1843) living in the Tigris River, Turkey. Turkish Journal of Zoology,15, 22-38.
  • Ünlü, E., Özbay, C., Kilic, A., Coskun, Y., Şeşen, R. (1997). GAP’ın faunaya etkileri. Türkiye Çevre Vakfı Yayını, 125, 79‐102. Ward, R.D. (2000). Genetics in fisheries management. Hydrobiologia, 420, 191-201. https://doi.org/10.1023/A:1003928327503
  • Xia, L., Guo, B., Ye, Y., Li, J., Wu, C. (2016). Determination of genetic diversity of the cuttlefish Sepiella japonica in habiting Chinese coastal waters using the mitochondrial D-loop region: The valuable inspiration to artificial releasing Project. Biochemical Systematics and Ecology, 69, 274-282. https://doi.org/10.1016/j.bse.2016.05.015
  • Zhang, Q., Sun, C., Zhu, Y., Xu, N., Liu, H. (2020). Genetic diversity and structure of the round-tailed paradise fish (Macropodus ocellatus): Implications for population management. Global Ecology and Conservation, 21(2020), e00876. https://doi.org/10.1016/j.gecco.2019.e00876
There are 33 citations in total.

Details

Primary Language English
Subjects Hydrobiology
Journal Section Research Articles
Authors

Arif Parmaksız 0000-0003-0321-8198

Project Number 17217
Publication Date October 1, 2021
Submission Date February 1, 2021
Published in Issue Year 2021Volume: 4 Issue: 4

Cite

APA Parmaksız, A. (2021). Determination of genetic variations by using mitochondrial DNA cyt b sequences in populations of Carasobarbus luteus (Cyprinidae). Aquatic Research, 4(4), 313-320. https://doi.org/10.3153/AR21026
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